Taxon	KO.D10.ORAL.A	KO.D10.ORAL.B	KO.D10.ORAL.C	KO.D10.ORAL.D	KO.D10.ORAL.E	WT.D10.ORAL.A	WT.D10.ORAL.B	WT.D10.ORAL.C	WT.D10.ORAL.D	WT.D10.ORAL.E
Bacteroides acidifaciens (SP1) 	0	0	52	0	0	0	0	0	0	0
Faecalibaculum rodentium (SP10) 	17	176	412	28	0	0	367	64	185	834
Eubacteriales_[G-2] bacterium_MOT-162 (SP11) 	0	0	0	0	4	0	0	0	0	0
Oscillospiraceae_[G-4] bacterium_MOT-151 (SP12) 	0	0	0	0	2	0	0	0	0	0
Ligilactobacillus murinus (SP14) 	70	521	260	77	406	494	1689	467	773	204
Limosilactobacillus reuteri (SP16) 	0	7	0	0	0	0	0	0	0	0
Helicobacter ganmani (SP17) 	0	2	0	0	0	0	0	0	0	0
Ileibacterium valens (SP20) 	159	553	0	302	49	0	0	0	0	0
Rodentibacter pneumotropicus (SP21) 	2432	7934	4870	1962	2523	3785	4321	5912	2948	7393
Muribaculum intestinale (SP24) 	0	0	0	0	3	0	0	0	0	0
Adlercreutzia mucosicola (SP27) 	0	0	0	0	0	0	0	0	2	0
Porphyromonas sp._MOT-131 (SP28) 	0	0	0	4837	8057	0	0	0	0	0
Muribacter muris (SP29) 	0	0	0	14	0	0	0	0	0	0
Parabacteroides goldsteinii (SP31) 	0	39	205	0	0	0	0	0	0	9
Lactobacillus intestinalis (SP32) 	0	14	0	0	6	0	0	0	0	0
Blautia hominis (SP34) 	0	0	136	0	0	0	0	0	0	0
Parabacteroides distasonis (SP35) 	0	14	30	0	0	0	2	0	3	0
Prevotella sp._MOT-128 (SP37) 	0	0	0	0	0	0	0	0	0	3
Rodentibacter heylii (SP38) 	2641	3401	2528	7191	13430	7	3038	2443	3656	2706
Carnobacteriaceae_[G-1] bacterium_MOT-198 (SP4) 	292	670	398	461	760	0	214	60	298	164
Bifidobacterium pseudolongum (SP41) 	8	15	43	0	10	0	0	0	0	0
Phocaeicola sartorii (SP42) 	37	474	352	57	30	10	124	8	170	68
Corynebacterium mastitidis (SP43) 	8	18	9	29	20	0	14	0	0	18
Erysipelotrichaceae_[G-1] bacterium_MOT-189 (SP5) 	221	1112	590	73	19	211	799	1122	386	1040
Enterococcus gallinarum (SP52) 	0	0	27	815	1517	1292	178	482	164	0
Lactobacillus johnsonii (SP54) 	4	24	11	0	0	0	0	0	0	0
Muribaculaceae_[G-1] bacterium_MOT-129 (SP55) 	0	5	0	13	0	0	0	20	12	0
Lachnospiraceae_[G-3] bacterium_MOT-168 (SP57) 	0	0	13	50	36	0	12	0	23	0
Streptococcus acidominimus (SP58) 	0	0	0	8436	14004	0	0	0	0	0
Erysipelatoclostridium [Clostridium] cocleatum (SP64) 	0	13	15	4	0	0	7	8	9	12
Ruminococcus gauvreauii (SP67) 	0	0	0	111	0	0	0	0	0	0
Escherichia fergusonii (SP69) 	0	0	0	21	467	33	0	0	40	0
Streptococcus sp._MOT-012 (SP7) 	6887	18509	13547	0	41	3837	10384	11291	12454	11391
Escherichia marmotae (SP71) 	0	0	0	8	82	0	0	0	0	0
Akkermansia muciniphila (SP75) 	0	0	3	0	0	0	0	0	0	0
Lachnospiraceae_[G-14] bacterium_MOT-185 (SP8) 	0	0	0	0	0	0	0	0	0	13
Alistipes timonensis (SP81) 	0	94	74	8	6	0	43	0	35	8
Alistipes sp._MOT-127 (SP82) 	0	0	0	0	0	0	0	0	10	0
Mollicutes_[G-2] bacterium_MOT-188 (SP89) 	0	0	0	0	0	0	0	0	4	0
Streptococcus danieliae (SP9) 	84	120	81	22	133	33	154	171	166	318
Weeksellaceae_[G_1] bacterium_MOT-126 (SP92) 	0	0	0	604	765	0	0	377	481	0
Muribacter sp._MOT-143 (SP94) 	0	0	0	0	10	0	0	5	0	0
Muribaculaceae_[G-1] bacterium_MOT-129_nov_93.228% (SPN109) 	0	149	0	8	0	0	6	19	11	21
Mailhella massiliensis_nov_91.242% (SPN136) 	0	42	32	86	7	0	0	0	41	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_92.993% (SPN14) 	0	85	0	0	0	0	0	0	0	12
Gluceribacter canis_nov_92.397% (SPN142) 	0	0	0	0	0	0	43	32	47	8
Parasutterella excrementihominis_nov_96.122% (SPN159) 	0	0	0	0	0	5	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_89.552% (SPN170) 	0	0	0	0	0	0	0	0	2	0
Bacteroidetes_[G-3] bacterium_HMT_365_nov_87.666% (SPN218) 	0	0	0	2	0	0	4	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.463% (SPN219) 	0	0	0	0	0	0	0	0	4	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.542% (SPN242) 	0	0	0	0	0	0	3	0	0	0
Lacrimispora saccharolytica_nov_91.495% (SPN250) 	0	0	0	0	0	0	0	0	0	2
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.231% (SPN254) 	0	0	0	0	0	0	3	0	0	0
Ihubacter massiliensis_nov_96.039% (SPN255) 	2	12	6	0	0	0	8	10	4	0
Duncaniella freteri_nov_92.271% (SPN27) 	0	9	0	0	0	0	0	0	0	0
Lachnospiraceae_[G-4] bacterium_MOT-169_nov_94.441% (SPN278) 	0	5	10	16	0	0	0	0	0	0
Bacteroides uniformis_nov_96.825% (SPN281) 	9	21	0	24	0	0	50	0	56	25
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.136% (SPN284) 	0	5	0	0	0	0	0	0	0	0
Duncaniella freteri_nov_91.008% (SPN288) 	0	18	7	4	0	0	0	0	0	0
Olsenella massiliensis_nov_94.126% (SPN291) 	9	23	55	155	16	6	33	35	47	80
Lachnospiraceae_[G-4] bacterium_MOT-169_nov_95.127% (SPN295) 	0	4	0	8	4	0	0	0	0	0
Faecalicatena contorta_nov_94.303% (SPN297) 	0	11	3	0	0	0	0	11	0	14
Muribaculaceae_[G-1] bacterium_MOT-129_nov_93.694% (SPN300) 	0	8	0	0	0	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.211% (SPN305) 	0	6	0	0	0	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_91.082% (SPN312) 	0	15	0	0	0	0	0	0	0	0
Lachnospiraceae_[G-8] bacterium_MOT-173_nov_88.988% (SPN314) 	0	0	0	0	2	0	0	0	0	0
Lachnospiraceae_[G-3] bacterium_MOT-168_nov_96.845% (SPN319) 	0	0	0	0	0	0	0	10	10	0
Alistipes senegalensis_nov_95.604% (SPN322) 	0	0	0	0	0	0	0	0	5	0
Mucispirillum schaedleri_nov_96.136% (SPN324) 	0	0	3	0	0	0	4	0	0	0
Neglectibacter timonensis_nov_96.655% (SPN330) 	0	0	0	0	0	0	0	0	0	2
Alistipes putredinis_nov_94.697% (SPN333) 	0	0	4	0	0	0	0	0	0	0
Longibaculum muris_nov_94.364% (SPN340) 	0	0	0	0	0	0	0	11	0	0
Clostridium merdae_nov_94.317% (SPN346) 	23	143	88	0	0	0	0	0	0	0
Eubacterium xylanophilum_nov_92.177% (SPN358) 	0	0	0	0	0	0	0	0	5	0
Mordavella massiliensis_nov_92.730% (SPN366) 	0	0	3	0	6	0	0	0	7	0
Alistipes shahii_nov_97.378% (SPN376) 	0	0	0	0	0	0	4	0	0	3
Alistipes senegalensis_nov_95.658% (SPN377) 	0	22	11	3	0	0	0	0	2	0
Duncaniella freteri_nov_93.493% (SPN38) 	0	3	0	0	0	0	0	0	0	0
Lacrimispora celerecrescens_nov_93.664% (SPN388) 	0	4	0	0	0	0	0	0	0	4
Mollicutes_[G-2] bacterium_MOT-188_nov_87.231% (SPN397) 	0	0	0	0	0	0	0	0	2	0
Prevotella sp._MOT-128_nov_91.581% (SPN401) 	0	11	0	0	0	0	0	0	0	0
Parabacteroides merdae_nov_95.530% (SPN62) 	0	4	0	0	0	0	0	0	0	0
Mediterraneibacter [Ruminococcus] gnavus_nov_94.983% (SPN74) 	0	0	0	18	0	0	10	20	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_90.736% (SPN86) 	0	6	0	0	0	0	0	0	0	0
Muribaculaceae_[G-2] bacterium_MOT-104_nov_93.360% (SPN98) 	0	0	0	0	0	0	2	0	0	0
Escherichia_Shigella fergusonii_flexneri (SPP3) 	0	0	0	23	201	30	0	0	22	0
Staphylococcus saprophyticus_xylosus (SPP5) 	0	0	0	0	0	0	0	0	6	0
